Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

PrintReads for Pair-ended Reads

maramara Posts: 10Member

Extracting reads from a BAM file using PrintReads will give only the reads at a given loci (and not its pair). Is there a way to extract reads covering a certain locus in addition to its matched pair?

Thank you!

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