Bug Bulletin: The recent 3.2 release fixes many issues. If you run into a problem, please try the latest version before posting a bug report, as your problem may already have been solved.

Bug in HaplotypeCaller 2.4-7 : "Bad likelihoods detected"

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 5,898Administrator, GATK Developer admin
edited March 2013 in Announcements

As reported here:
http://gatkforums.broadinstitute.org/discussion/comment/4114#Comment_4114

If you encounter this bug too, please don't post a new question about it. Feel free to comment in this thread to let us know you have also had the same problem.

Thank you for your patience while we work to fix this issue.

Update: the "Bad likelihoods detected error" is fixed in the latest version.

Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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