Bug in HaplotypeCaller v2.4: "Reads are too small for use in assembly."

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 6,672Administrator, GATK Developer admin
edited March 2013 in Announcements

We have received reports of a bug occurring with HaplotypeCaller in v2.4, with the error message "Reads are too small for use in assembly." We are working to fix it.

In the meantime, if you encounter it too, please don't post a new discussion about it, but do post a comment on this announcement so that we can count how many people are affected.

Thank you for your patience and our apologies for the inconvenience!

UPDATE: This is fixed as of version 2.4-7.

Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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