BAQ tag error

Gaurav1983Gaurav1983 Posts: 10Member

Hi,

I ran print reads command with -baq option as recalculate. But while running UnifiedGenotyper, i am getting following error:

"BAQ tag error: the BAQ value is larger than the base quality"

I am running UnifiedGenotyper with -baq option as CALCULATE_AS_NECESSARY.

Can you please let me know the reason for above error.

Regards

Gaurav

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