Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

how/where to download resource vcf files

genaro_pimientagenaro_pimienta Posts: 15Member
edited February 2013 in Ask the GATK team

Hello, I am having a hard time finding the resource vcf files, needed for VariantRecalibration.

hapmap_3.3.b37.sites.vcf
1000G_omni2.5.b37.sites.vcf
dbsnp_135.b37.vcf

I don't seem to find them in the GATK bundle, as suggested:

http://gatkforums.broadinstitute.org/discussion/1215/how-can-i-access-the-gsa-public-ftp-server

Any help appreciated Thanks, G.

Post edited by Geraldine_VdAuwera on

Best Answers

Answers

Sign In or Register to comment.