Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

UnifiedGenotyping, HaplotypeCaller and PhasebyTrasmission

GiulianoGiuliano Posts: 3Member
edited February 2013 in Ask the team

Hi to all

I began a variant analysis from 4 family related exome-seq samples in which a patology seems to be related to a polimorphism. I am just wondering which variant calling tools is better to use and if applying PhasebyTrasmission refinement is the correct way (in PhasebyTrasmission analysis does the read group that I assigned to bam file play a role in definition of the relation or I have to use just the ped file?).

Best
Giuliano

Post edited by Geraldine_VdAuwera on

Best Answer

Sign In or Register to comment.