Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

HaplotypeCaller on haploid genomes

RoddyPRoddyP Posts: 1Member
edited February 2013 in Ask the team

I'm trying to run HaplotypeCaller on a haploid organism. Is this possible? What argument should I use for this? My first attempt produced a diploid calls.

Sorry for the silly question

Post edited by Geraldine_VdAuwera on

Answers

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