Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.
Can I use GATK to select a private SNP from multi sample VCF file
Can I use GATK to select a private SNP from multi sample VCF file?
With a private SNP I mean a SNP where all but 1 sample in a multi sample vcf file are genotype 0/0.
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