Service note: Geraldine is on vacation this week; other members of GSA will be responding to questions, but they have a lot of work besides this, so be aware that responses may be a little slower than usual. Thank you for your patience.
Why is ABHet not appearing in the vcf file's annotations?
We are using the unified genotyper to create a vcf file. In the vcf file we see the info tags;
INFO=<ID=ABHet,Number=1,Type=Float,Description="Allele Balance for hets (ref/(ref+alt))">
INFO=<ID=ABHom,Number=1,Type=Float,Description="Allele Balance for homs (A/(A+O))">
but when we look at the exported annotations
we only see ABHom not ABHet.
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