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XHMM documentation articles coming soon.
Geraldine Van der Auwera, PhD
Hi, is it possible to integrate the XHMM into GATK so that people can use Queue to run it? Thanks a lot!
Hi,
There is indeed a Qscript to run XHMM currently distributed in: public/scala/qscript/org/broadinstitute/sting/queue/qscripts/CNV/xhmmCNVpipeline.scala
We have yet to provide documentation, so you;d have to familiarize yourself with running Queue scripts more generally before you attempt this yet: http://gatkforums.broadinstitute.org/discussion/1306/overview-of-queue
We hope to document this XHMM script more thoroughly in the coming months.
Comments
Hi, is it possible to integrate the XHMM into GATK so that people can use Queue to run it? Thanks a lot!
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0 • Off Topic Disagree Agree Like WTF •Hi,
There is indeed a Qscript to run XHMM currently distributed in: public/scala/qscript/org/broadinstitute/sting/queue/qscripts/CNV/xhmmCNVpipeline.scala
We have yet to provide documentation, so you;d have to familiarize yourself with running Queue scripts more generally before you attempt this yet: http://gatkforums.broadinstitute.org/discussion/1306/overview-of-queue
We hope to document this XHMM script more thoroughly in the coming months.
- Spam
- Abuse
- Troll
0 • Off Topic Disagree Agree Like WTF •