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XHMM documentation articles coming soon.
Geraldine Van der Auwera, PhD
Hi, is it possible to integrate the XHMM into GATK so that people can use Queue to run it? Thanks a lot!
Hi,
There is indeed a Qscript to run XHMM currently distributed in: public/scala/qscript/org/broadinstitute/sting/queue/qscripts/CNV/xhmmCNVpipeline.scala
We have yet to provide documentation, so you;d have to familiarize yourself with running Queue scripts more generally before you attempt this yet: http://gatkforums.broadinstitute.org/discussion/1306/overview-of-queue
We hope to document this XHMM script more thoroughly in the coming months.
Geraldine_VdAuwera
Posts: 2,239Administrator, GSA Official Member admin
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Hi, is it possible to integrate the XHMM into GATK so that people can use Queue to run it? Thanks a lot!
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0 • Off Topic Disagree Agree Like WTF •Hi,
There is indeed a Qscript to run XHMM currently distributed in: public/scala/qscript/org/broadinstitute/sting/queue/qscripts/CNV/xhmmCNVpipeline.scala
We have yet to provide documentation, so you;d have to familiarize yourself with running Queue scripts more generally before you attempt this yet: http://gatkforums.broadinstitute.org/discussion/1306/overview-of-queue
We hope to document this XHMM script more thoroughly in the coming months.
- Spam
- Abuse
- Troll
0 • Off Topic Disagree Agree Like WTF •