Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

GATK Python wrappers??

priesgopriesgo Posts: 19Member
edited January 2013 in Ask the team

Hi all,

Wouldn't it be useful to have GATK wrapped into a Python API? pygatk. As pysam is for samtools or pybedtools is for bedtools. Is anybody developing this?

Regards, Pablo.

Post edited by Geraldine_VdAuwera on


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