Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

BaseRecalibrator - how do you get the plots to work?

mike_boursnellmike_boursnell Posts: 69Member

I have used BaseRecalibrator with the -plots option, but no PDF is produced. Is there some other software that is required for this?

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