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Here is a Dropbox link to the presentations given at the Dec 4-5 GATK workshop:
Geraldine Van der Auwera, PhD
Here is the link to the XHMM presentation:
Well presented and thanks for the slides - seems very useful for my future work.
Thank you for the slides, Geraldine_VdAuwera. I'm reading them in order to learn GATK.
What is the reference genome for the tutorial (.fa) and where can i download it? I tried with http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/ (chr 20), but it doesn't seem to work.
Thank you very much again.
You can find the files in our the resources bundle on our FTP server; see instructions here: