Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

About "Frequently Asked Questions"

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 5,230Administrator, GSA Member admin
edited January 2013 in FAQs

This section lists (and answers!) frequently asked questions.

These documentation articles cover specific points of clarification about the following:


  • details of how the GATK tools work and how they should be applied to datasets

  • questions that are related to NGS formats and concepts but are not specific to the GATK

  • questions about the community forum, documentation website and user support system

Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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