Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

Criteria for filtering Indel calls

mikawinmikawin Posts: 9Member

Hello,

I am calling SNPs and Indels on a non-mammalian genome and do not have an empirical truth set for either. What would you recommend are the annotations I can use for filtering out low-confidence calls?

Thanks for your input! ~Mika

Tagged:

Best Answer

Answers

Sign In or Register to comment.