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Service note: Geraldine is on vacation this week; other members of GSA will be responding to questions, but they have a lot of work besides this, so be aware that responses may be a little slower than usual. Thank you for your patience.

Reduced Bam hangs in Crest

sheenamssheenams Posts: 9Member ✭
in Ask the team

I've tried using the output of the Reduced Bams as an input to Crest (after some preprocessing) but it hangs on chr7. Has anyone else used the reduced bam in other programs? Is this output meant to only be used in GATK?

Thanks!

Post edited by Geraldine_VdAuwera on
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