Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.
Where can I get AnalyzeCovariates.jar
I have just downloaded the GATK 2.2.3 from broad but I cant find the AnalyzeCovariates.jar file, where can I get it?
Post edited by Geraldine_VdAuwera on
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