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I'm not able to run this program on my Mac

OliverOliver Posts: 0Member
edited October 2012 in Ask the GATK team

Hi I´ve a strange problem with the GATK. Everytime I try to run it my Console shows the following error Message.

30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR ------------------------------------------------------------------------------------------
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR A USER ERROR has occurred (version 2.1-13-g0f021e6): 
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR The invalid arguments or inputs must be corrected before the GATK can proceed
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR Please do not post this error to the GATK forum
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR See the documentation (rerun with -h) for this tool to view allowable command-line arguments.
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR Visit our website and forum for extensive documentation and answers to 
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR commonly asked questions http://www.broadinstitute.org/gatk
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR MESSAGE: Argument with name '--analysis_type' (-T) is missing.
30.10.12 15:10:06   [0x0-0xe20e2].com.apple.JarLauncher[1114]   ##### ERROR ------------------------------------------------------------------------------------------

Can you show me my mistakes please? With regards Oliver

Post edited by Geraldine_VdAuwera on

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