Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

AD and DP in VCF from ReduceRead BAMs

MonkolMonkol Posts: 6Member
edited October 2012 in Ask the team

Does the relationship between AD and DP stil hold in VCF produced from ReduceRead BAMs? That is the sum of AD is <= DP Or can other scenarios now occur?

Also is AD summarized to 1,0 or 0,1 for homozygous REF and ALT? Thanks.

Post edited by Geraldine_VdAuwera on
Tagged:

Best Answers

Answers

Sign In or Register to comment.