AD and DP in VCF from ReduceRead BAMs

MonkolMonkol Posts: 6Member
edited October 2012 in Ask the GATK team

Does the relationship between AD and DP stil hold in VCF produced from ReduceRead BAMs? That is the sum of AD is <= DP Or can other scenarios now occur?

Also is AD summarized to 1,0 or 0,1 for homozygous REF and ALT? Thanks.

Post edited by Geraldine_VdAuwera on
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