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What is the difference between -BadMateFilter and -MappingQualityFilter in Unifiedgenotyper?

leeyoungwhaleeyoungwha Posts: 18Member
edited October 2012 in Ask the GATK team

It was a bit unclear what the BadMateFilter is doing in the documentation. Any information would be appreciated!

Post edited by Geraldine_VdAuwera on

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