Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.
What is the difference between -BadMateFilter and -MappingQualityFilter in Unifiedgenotyper?
It was a bit unclear what the BadMateFilter is doing in the documentation. Any information would be appreciated!
Post edited by Geraldine_VdAuwera on
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