Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

BaseRecalibrator/PrintReads BD and BI flags

genecgenec Posts: 8Member
edited January 2013 in Ask the GATK team

What are the BD and BI flags that get added to my bam files after base recalibration? They seem to consist of a long string of "N"s, and I'm trying to understand if that is correct.

Thanks!

Post edited by Geraldine_VdAuwera on

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