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ReduceReads error: "Trying to clip before the start or after the end of a read"

loranialorania Posts: 9Member
edited September 2012 in Ask the GATK team

Hi,
I'm running GATK version 2.1-8 with reads mapped to mm10. ReduceReads fails somewhere on chr2 with above message. From previous posts I understood that this bug has appeared already? Could you please help me to fix it?
Thank you,

Ania

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