Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

about an error using DepthOfCoverage with -geneList

gpleogpleo Posts: 2Member
edited January 2013 in Ask the GATK team

when " RMDTrackBuilder - Loading Tribble index from disk for file refGene.sorted.txt " error occurs:

ERROR MESSAGE: Badly formed genome loc: Contig chr1 given as location, but this contig isn't present in the Fasta sequence dictionary

is it means that my refGene.sorted.txt or b37.fasta file is badly formed? what should I do ?

Post edited by Geraldine_VdAuwera on
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