Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

about an error using DepthOfCoverage with -geneList

gpleogpleo Posts: 2Member
edited January 2013 in Ask the team

when " RMDTrackBuilder - Loading Tribble index from disk for file refGene.sorted.txt " error occurs:

ERROR MESSAGE: Badly formed genome loc: Contig chr1 given as location, but this contig isn't present in the Fasta sequence dictionary

is it means that my refGene.sorted.txt or b37.fasta file is badly formed? what should I do ?

Post edited by Geraldine_VdAuwera on
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