Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Sign In with Google Sign In with OpenID Sign In with Twitter
Sign In Register

Categories

Powered by Vanilla. Made with Bootstrap.
Service note: Geraldine is on vacation this week; other members of GSA will be responding to questions, but they have a lot of work besides this, so be aware that responses may be a little slower than usual. Thank you for your patience.

Notice: Bug affecting BQSR run with Queue scatter-gather

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 2,238Administrator, GSA Official Member admin
in Announcements

We have discovered a bug that seriously impacts the results of BQSR/ BaseRecalibrator when it is run with the scatter-gather functionality of Queue. To be clear, the bug does NOT affect BaseRecalibrator runs performed "normally", i.e. WITHOUT Queue's scatter-gather.

Consequences/ Solution:

Please be aware that if you have been using BaseRecalibrator scatter-gathered with Queue (GATK versions 2.0 and 2.1), your results may be wrong. You will need to redo the base recalibration of your data WITHOUT scatter-gathering.

This issue will be fixed in the next release (version 2.2). We apologize for any inconvenience this may cause you!

Geraldine Van der Auwera, PhD

Tagged:
Flag • Off Topic Disagree Agree Like WTF •
Sign In or Register to comment.