Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

HaplotypeCaller with Queue

flescaiflescai Posts: 48Member ✭✭
edited September 2012 in Ask the team

Is there any example of a queue script calling variants with the HaplotypeCaller? thanks! Francesco

Post edited by flescai on

Best Answer


Sign In or Register to comment.