Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

MergeReadDepthCoverage

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 5,235Administrator, GSA Member admin
edited September 2012 in GenomeSTRiP Documentation

1. Introduction

The MergeReadDepthCoverage utility merges files containing read depth counts into one file.

This utility is used for parallelizing computation of read depth coverage.

See also ComputeReadDepthCoverage.

2. Inputs / Arguments

  • -I <coverage-file> : The set of input coverage files.

3. Outputs

  • -O <coverage-file> : Tab delimited merged output file.
Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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