The current GATK version is 3.2-2

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Bug Bulletin: The recent 3.2 release fixes many issues. If you run into a problem, please try the latest version before posting a bug report, as your problem may already have been solved.

edited September 2012

1. Introduction

The MergeReadSpanCoverage utility merges files containing read span counts into one file.

This utility is used for parallelizing computation of read span coverage.

2. Inputs / Arguments

• -I <span-coverage-file> : The set of input span coverage files.

3. Outputs

• -O <span-coverage-file> : Tab delimited merged output file.
Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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