Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

MergeInsertSizeDistributions

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 5,210Administrator, GSA Member admin
edited September 2012 in GenomeSTRiP Documentation

1. Introduction

The MergeInsertSizeDistributions utility combines multiple insert size histogram files into one.

The insert size histograms are stored in a binary file format.

2. Inputs / Arguments

  • -I <histogram-file> : The set of input histogram files.

  • -disjoint : If specified, assume the input files contain disjoint data, which is faster. If not specified, histograms with the same <Sample, Library, ReadGroup> key are merged.

3. Outputs

  • -O <histogram-file> : Output binary histogram file.
Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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