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Service note: Geraldine is on vacation this week; other members of GSA will be responding to questions, but they have a lot of work besides this, so be aware that responses may be a little slower than usual. Thank you for your patience.

MergeDiscoveryOutput

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 2,238Administrator, GSA Official Member admin
in GenomeSTRiP Documentation

1. Introduction

The MergeDiscoveryOutput utility merges the results of a parallel discovery run into genome-wide output files.

In addition to merging the main VCF files, this utility will also merge the auxilliary output files (but leave them in the run directory).

2. Inputs / Arguments

  • -runDirectory <directory> : The run directory where the output files from each partition are stored.

3. Outputs

  • -O <vcf-file> : The location to write the merged output VCF file.
Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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