Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

ComputeInsertStatistics

Geraldine_VdAuweraGeraldine_VdAuwera Posts: 5,235Administrator, GSA Member admin
edited September 2012 in GenomeSTRiP Documentation

1. Introduction

The ComputeInsertStatistics utility prints statistics about the data in a binary histogram file.

The printed metrics include the median insert size and robust standard deviation (RSD). The RSD is the width of the central 68% of the insert size distribution.

2. Inputs / Arguments

  • -I <histogram-file> : The input binary histogram file.

3. Outputs

  • -O <output-file> : Tab-delimited output file (default is stdout).
Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

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