Bug Bulletin: The recent 3.2 release fixes many issues. If you run into a problem, please try the latest version before posting a bug report, as your problem may already have been solved.

Does HaplotypeCaller cost a lot of RAM?

skblazerskblazer Posts: 18Member
edited September 2012 in Ask the GATK team

I tried to run several HaplotypeCaller jobs simultaneously on a node. But sometimes, not all the time, they caused the nodes collapse. I noticed that HaplotypeCaller sometimes occupied tens of GB of memory, is this normal? The average depth for my samples is 30x-50x.

Post edited by Geraldine_VdAuwera on
Tagged:

Best Answer

Sign In or Register to comment.