Bug Bulletin: The recent 3.2 release fixes many issues. If you run into a problem, please try the latest version before posting a bug report, as your problem may already have been solved.

Remove duplicate reads from the DepthOfCoverage

gtg269cgtg269c Posts: 1Member
edited January 2013 in Ask the GATK team

I was wondering if there is an option to remove duplicate reads when the coverage is determined using DepthOfCoverage from a .BAM file. Or is there an alternate way to remove the duplicate reads.

Thanks Amin

Post edited by Geraldine_VdAuwera on


Sign In or Register to comment.