Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

Remove duplicate reads from the DepthOfCoverage

gtg269cgtg269c Posts: 1Member
edited January 2013 in Ask the GATK team

I was wondering if there is an option to remove duplicate reads when the coverage is determined using DepthOfCoverage from a .BAM file. Or is there an alternate way to remove the duplicate reads.

Thanks Amin

Post edited by Geraldine_VdAuwera on


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