Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

Remove duplicate reads from the DepthOfCoverage

gtg269cgtg269c Posts: 1Member
edited January 2013 in Ask the team

I was wondering if there is an option to remove duplicate reads when the coverage is determined using DepthOfCoverage from a .BAM file. Or is there an alternate way to remove the duplicate reads.

Thanks Amin

Post edited by Geraldine_VdAuwera on

Answers

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