It looks like you're new here. If you want to get involved, click one of these buttons!
matan8
Posts: 2Member ✭
Hi all, I am working with GATK on illumina data that was created from yeasts (SK1 strain). Since it is sequencing of a colony and not the exact same organism, I am using a filter that I wrote on the ratio of the reads that support the alternative allele. Is anyone else using something similar? Is there a build-in filter like that?
Comments
You mean you're filtering out all reads that do not have the alternate allele?
Mauricio Carneiro, PhD http://www.broadinstitute.org/~carneiro/
- Spam
- Abuse
- Troll
0 • Off Topic Disagree Agree Like WTF •