Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

HaplotypeCaller and Reduced BAMs

fadistafadista Posts: 3Member
edited August 2012 in Ask the GATK team

Hi,

I would like to ask if the most recent version of GATK is stable enough for HaplotypeCaller to work well with Reduced BAMs. If not, can you give an estimate of when would that be in place? Thanks in advance.

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