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The version of GATK i have installed is unable to find command "HaplotypeCaller", i have the following versions of GATK installed. version 2.0-0-gb142977 (built from git) version 2.0-0-g4c0ffd4 (GenomeAnalysisTKLite.jar) version 1.6-13-g91f02df
Errors out saying cannot find walker with name HaplotypeCaller.