-rf Read Filters

Sophia

Dear all,

is there a way to get a list of all available read filters that can be used with the -rf option? Something like the --list in the CountCovariate or VariantAnnotator command line?

Thanks and cheers, Sophia

Geraldine_VdAuwera

Hi Sophia,

If you take a look at our technical documentation, you will find the list of available read filters.

http://www.broadinstitute.org/gatk/gatkdocs/

Cheers!