Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.
is there a way to get a list of all available read filters that can be used with the -rf option?
Something like the --list in the CountCovariate or VariantAnnotator command line?
Thanks and cheers,
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