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LeftAlignIndels

SophiaSophia Posts: 35Member
edited July 2012 in Ask the GATK team

Dear all,

I was browsing through some of the less used functions in the GATK documentation, hence the following question: Does the LeftAlignIndels function do something additional that is not happening with IndelRealigner? In other words, do you recommend to run LeftAlignIndels on top of the indel realignment?

Best regards, Sophia

Post edited by Sophia on

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