GATK licensing moves to direct-through-Broad model -- read about it on the GATK blog

VariantsToTable

SystemSystem Posts: 226Administrator admin
edited July 2012 in Tool Bulletin

A new tool has been released!

Check out the documentation at VariantsToTable.

Comments

  • flowflow Posts: 14Member

    Hello, I am getting non-sensical output when using the VariantToTable -GF AD. Output columns for other genotype subfields look fine, but the AD column gives results that look like [[I@168e4805] or [[I@7f6877f8]. This is true for both indel-only and snp-only vcfs. Can you advise?

  • ebanksebanks Broad InstitutePosts: 684Member, Administrator, GATK Dev, Broadie, Moderator, DSDE Member, GP Member admin

    This has already been asked and addressed in another thread recently.

    Eric Banks, PhD -- Senior Group Leader, MPG Analysis, Broad Institute of Harvard and MIT

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